cbicaDTIProcessingManager.h File Reference

File that holds the DTIProcessingManager class. More...

#include "string.h"
#include <algorithm>
#include "itkImageIOBase.h"
#include "itkImage.h"
#include "itkVectorImage.h"
#include "itkImageFileReader.h"
#include "itkImageSeriesReader.h"
#include "itkImageFileWriter.h"
#include "itkCastImageFilter.h"
#include "itkGDCMImageIO.h"
#include "itkGDCMSeriesFileNames.h"
#include "itkExtractImageFilter.h"
#include "itkDiffusionTensor3DReconstructionImageFilter.h"
#include "itkBinaryThresholdImageFilter.h"
#include "itkDiffusionTensor3D.h"
#include "gdcmDictEntry.h"
#include "gdcmDict.h"
#include "gdcmFile.h"
#include "gdcmGlobal.h"
#include "gdcmElement.h"
#include "gdcmPrivateTag.h"
#include "gdcmStringFilter.h"
#include "cbicaUtilities.h"
#include "itkImageMaskSpatialObject.h"
#include "itkNumericTraits.h"
#include "itkRescaleIntensityImageFilter.h"
#include "itkTensorFractionalAnisotropyImageFilter.h"
#include "itkTensorRelativeAnisotropyImageFilter.h"
#include "itkDiscreteGaussianImageFilter.h"
#include "itkNrrdImageIO.h"

Include dependency graph for cbicaDTIProcessingManager.h:

Go to the source code of this file.

Classes
class	DTIProcessingManager
	A small description of the class. More...

Typedefs
typedef itk::MetaDataDictionary	DictionaryType
typedef itk::GDCMImageIO	ImageIOType
using	ImageTypeScalar3D = itk::Image< float, 3 >
typedef itk::GDCMSeriesFileNames	InputNamesGeneratorType
typedef short	PixelValueType
typedef itk::ImageSeriesReader< VolumeType >	ReaderType
typedef itk::VectorImage< PixelValueType, Dimensions >	VectorImageType
typedef itk::Image< PixelValueType, Dimensions >	VolumeType

Functions
const gdcm::DictEntry	GEDictBValue ("0x0043", "0x1039", gdcm::VR::IS, gdcm::VM::VM1, "B Value of diffusion weighting")
const gdcm::DictEntry	GEDictXGradient ("0x0019", "0x10bb", gdcm::VR::DS, gdcm::VM::VM1, "X component of gradient direction")
const gdcm::DictEntry	GEDictYGradient ("0x0019", "0x10bc", gdcm::VR::DS, gdcm::VM::VM1, "Y component of gradient direction")
const gdcm::DictEntry	GEDictZGradient ("0x0019", "0x10bd", gdcm::VR::DS, gdcm::VM::VM1, "Z component of gradient direction")
const gdcm::DictEntry	SiemensDictBValue ("0x0019", "0x100c", gdcm::VR::IS, gdcm::VM::VM1, "B Value of diffusion weighting")
const gdcm::DictEntry	SiemensDictDiffusionDirection ("0x0019", "0x100e", gdcm::VR::FD, gdcm::VM::VM3, "Diffusion Gradient Direction")
const gdcm::DictEntry	SiemensDictDiffusionMatrix ("0x0019", "0x1027", gdcm::VR::FD, gdcm::VM::VM6, "Diffusion Matrix")
const gdcm::DictEntry	SiemensDictNMosiac ("0x0019", "0x100a", gdcm::VR::US, gdcm::VM::VM1, "Number of Images In Mosaic")
const gdcm::DictEntry	SiemensMosiacParameters ("0x0051", "0x100b", gdcm::VR::IS, gdcm::VM::VM1, "Mosiac Matrix Size")

Variables
const int	Dimensions = 3

Detailed Description

File that holds the DTIProcessingManager class.

https://www.med.upenn.edu/sbia/software///
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Copyright (c) 2018 University of Pennsylvania. All rights reserved.
See COPYING file or https://www.med.upenn.edu/cbica/software-agreement.html