cbicaITKDtiRecon.h File Reference

Declaration of DtiRecon. More...

#include <iostream>
#include <fstream>
#include <string>
#include <sstream>
#include <sys/stat.h>
#include "itkTensorFractionalAnisotropyImageFilter.h"
#include "itkDiscreteGaussianImageFilter.h"
#include "itkImageFileReader.h"
#include "itkImageFileWriter.h"
#include "itkMetaDataDictionary.h"
#include "itkImageSeriesReader.h"
#include "itkDisplacementFieldJacobianDeterminantFilter.h"
#include "itkImageRegionIteratorWithIndex.h"
#include "itkNiftiImageIO.h"
#include "itkNrrdImageIO.h"
#include "itkImageMaskSpatialObject.h"
#include "itkBinaryThresholdImageFilter.h"
#include "itkNumericTraits.h"
#include "itkCommand.h"
#include "itkDiffusionTensor3DReconstructionImageFilter.h"
#include "cbicaITKCommonHolder.h"
#include "cbicaLogging.h"

Include dependency graph for cbicaITKDtiRecon.h:

Go to the source code of this file.

Functions
template<typename TOutputImageType , typename TTensorImageType >
void	allocateImage (typename TOutputImageType::Pointer scIm, const typename TTensorImageType::Pointer tenIm)
template<typename TVectorImageType , typename TScalarImageType , typename TMaskImageType , typename TOutputTensorCompType >
std::vector< typename TScalarImageType::Pointer >	dtiRecon (typename TVectorImageType::Pointer inputImage, const typename TMaskImageType::Pointer maskImage, const std::vector< std::vector< float > > &gradValues, const float &bValue, std::string outputBasename, bool verbose, bool inputIsVectorImage)

Detailed Description

Declaration of DtiRecon.

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