Configuration Templates

A small set of configuration templates is provided to illustrate typical use cases. To view and/or use these templates:

  1. Go to examples/config_templates directory.

cd examples/config_templates

  1. Select the template (example: rois)

cd rois

  1. View the QC report .html report pre-saved in .pdf format

acroread qcreport.pdf

  1. Run the script to generate the QC report using the configuration file, and to view the QC report

./run_on_example.data.sh