Index

A

append_derived_rois() (in module NiChart_DLMUSE.CalcROIVol), [1] apply_combine_masks() (in module NiChart_DLMUSE.MaskImage), [1] apply_create_roi_csv() (in module NiChart_DLMUSE.CalcROIVol), [1]

apply_mask_img() (in module NiChart_DLMUSE.MaskImage), [1] apply_relabel_rois() (in module NiChart_DLMUSE.RelabelROI), [1] apply_reorient_img() (in module NiChart_DLMUSE.ReorientImage), [1] apply_reorient_to_init() (in module NiChart_DLMUSE.ReorientImage), [1]

C

calc_bbox_with_padding() (in module NiChart_DLMUSE.MaskImage), [1] calc_roi_volumes() (in module NiChart_DLMUSE.CalcROIVol), [1] collect_T1() (in module NiChart_DLMUSE.utils), [1]

combine_masks() (in module NiChart_DLMUSE.MaskImage), [1] combine_roi_csv() (in module NiChart_DLMUSE.CalcROIVol), [1] create_roi_csv() (in module NiChart_DLMUSE.CalcROIVol), [1]

D

dir_foldercount() (in module NiChart_DLMUSE.utils), [1]

dir_size() (in module NiChart_DLMUSE.utils), [1]

G

get_basename() (in module NiChart_DLMUSE.utils), [1]

get_bids_prefix() (in module NiChart_DLMUSE.utils), [1]

M

make_img_list() (in module NiChart_DLMUSE.utils), [1] mask_img() (in module NiChart_DLMUSE.MaskImage), [1] merge_bids_output_data() (in module NiChart_DLMUSE.utils), [1] merge_output_data() (in module NiChart_DLMUSE.utils), [1] module NiChart_DLMUSE, [1] NiChart_DLMUSE.CalcROIVol, [1] NiChart_DLMUSE.dlmuse_pipeline, [1] NiChart_DLMUSE.MaskImage, [1] NiChart_DLMUSE.RelabelROI, [1] NiChart_DLMUSE.ReorientImage, [1] NiChart_DLMUSE.SegmentImage, [1] NiChart_DLMUSE.utils, [1]

N

NiChart_DLMUSE module, [1] NiChart_DLMUSE.CalcROIVol module, [1] NiChart_DLMUSE.dlmuse_pipeline module, [1] NiChart_DLMUSE.MaskImage module, [1]

NiChart_DLMUSE.RelabelROI module, [1] NiChart_DLMUSE.ReorientImage module, [1] NiChart_DLMUSE.SegmentImage module, [1] NiChart_DLMUSE.utils module, [1]

R

relabel_rois() (in module NiChart_DLMUSE.RelabelROI), [1] remove_common_suffix() (in module NiChart_DLMUSE.utils), [1] remove_subfolders() (in module NiChart_DLMUSE.utils), [1]

reorient_img() (in module NiChart_DLMUSE.ReorientImage), [1] run_dlicv() (in module NiChart_DLMUSE.SegmentImage), [1] run_dlmuse() (in module NiChart_DLMUSE.SegmentImage), [1] run_pipeline() (in module NiChart_DLMUSE.dlmuse_pipeline), [1]

S

split_data() (in module NiChart_DLMUSE.utils), [1]