Index

A

add_img_names() (in module MRISnapshot.prep_data)

C

calc_sel_slices() (in module MRISnapshot.create_report) check_foreground_mask() (in module MRISnapshot.create_report) checkFile() (in module MRISnapshot.utils.misc_utils) copy_edited_js() (in module MRISnapshot.create_report) copy_js() (in module MRISnapshot.create_report)

create_dir() (in module MRISnapshot.create_report) create_html_report() (in module MRISnapshot.create_report) create_report() (in module MRISnapshot.create_report) create_snapshots() (in module MRISnapshot.create_report) crop_nifti() (in module MRISnapshot.create_report)

D

digitize_olay() (in module MRISnapshot.create_report)

E

extract_snapshot() (in module MRISnapshot.create_report)

G

get_img_mat() (in module MRISnapshot.create_report)

H

html_Navig() (in module MRISnapshot.utils.html_utils) html_stylesheet() (in module MRISnapshot.utils.html_utils) htmlMainPage() (in module MRISnapshot.utils.html_utils)

htmlQCForm() (in module MRISnapshot.utils.html_utils) htmlSnapshot() (in module MRISnapshot.utils.html_utils) htmlSubjectAddImage() (in module MRISnapshot.utils.html_utils) htmlSubjectPrefix() (in module MRISnapshot.utils.html_utils)

M

main() (in module MRISnapshot.create_report) (in module MRISnapshot.prep_data) module MRISnapshot MRISnapshot.create_report MRISnapshot.prep_data MRISnapshot.utils MRISnapshot.utils.html_utils MRISnapshot.utils.img_overlays MRISnapshot.utils.misc_utils MRISnapshot.utils.mylogger MRISnapshot module

MRISnapshot.create_report module MRISnapshot.prep_data module MRISnapshot.utils module MRISnapshot.utils.html_utils module MRISnapshot.utils.img_overlays module MRISnapshot.utils.misc_utils module MRISnapshot.utils.mylogger module

O

overlayImage() (in module MRISnapshot.utils.img_overlays)

overlayImageDouble() (in module MRISnapshot.utils.img_overlays)

P

parse_config() (in module MRISnapshot.create_report)

prep_dataset() (in module MRISnapshot.prep_data)

R

read_and_check_images() (in module MRISnapshot.create_report)

resize_nifti() (in module MRISnapshot.create_report)

S

scale_img_contrast() (in module MRISnapshot.create_report)

sel_vals_nifti() (in module MRISnapshot.create_report) singleImage() (in module MRISnapshot.utils.img_overlays)

W

writeLog() (in module MRISnapshot.utils.misc_utils)